Details of SNPs from the simulated genotype matrix X used to generate two traits

Source: R/snpinfo.R

This is a data.frame with 334 rows, each corresponding to a SNP, and with 4 columns: ID=rs ID; pos=base-pair position; allele0=non-reference allele; allele1=reference allele For a region of 345 SNPs in chromosme 10p-6030000-6220000 (GRCh37/hg19), containing IL2RA, we generated a population of 100,000 individuals based on the CEU 1000 Genomes Phase 3 data using HapGen2. We selected a random sample of 2000 from this population and only retained the 334 variants with MAF > 0.005 in this sample.

snpinfo

Format

An object of class data.frame with 336 rows and 4 columns.