Best models from a snpmpd object by cpp or maximum number of models - modification of best.models from GUESSFM by Chris Wallace

Best models from a snpmpd object by cpp or maximum number of models - modification of best.models from GUESSFM by Chris Wallace

best.models.cpp(d, cpp.thr = 0.99, maxmod = NULL)

Arguments

d	snpmod object
cpp.thr	cumulative posterior probability threshold for selecting top models; this is ignored when maxmod is specified
maxmod	maximum number of top models to output; NULL by default

Value

list of two objects: models = data.frame of top SNP models ordered by posterior probability (PP); the PPs are re-scaled to sum to 1; old.cpp = cpp before PPs adjusted to sum to 1