Formats flashfm output to table format

Source: R/FMtables.R

Formats flashfm output to table format

FMtables(
  PP,
  SW = NULL,
  stepwise = F,
  method = "FineMap",
  regname,
  path.input,
  path.output,
  trait.id,
  trait.names = NULL
)

Arguments

PP

MFM:::MPP.PP.groups.fn output from 'flashfm' in Rdata format.
SW

stepwise list of results from Stepwise model. By def. = NULL
stepwise

TRUE if list of results from sw is provided. By def. = FALSE
method

name of the method used for the FineMap eg: 'FineMap', 'JAM' etc. By def. = FineMap
regname

Region name for table caption
path.input

path where the input files are located.
path.output

path to save the output latex table.
trait.id

id. number if the traits.
trait.names

trait names. If not provided a vector is constructed. 'Trait_1', 'Trait_2', ...

Value

Table results as txt file.