makeSNPgroupsU.Rd
Make SNP groups using fine-mapping information from all of the traits
makeSNPgroupsU(
main.input,
is.snpmat,
min.mppi = 0.01,
minsnpmppi = 0.01,
r2.minmerge = 0.5
)
output from flashfm.input function
logical taking value TRUE when genotype matrix is provided and FALSE when covariance matrix is given
trim snp groups with total MPPI < min.mppi in all diseases; default 0.01
only group snps with total MPPI > minsnpmppi; default 0.01
merge groups with minimum between-group r2 > r2.minmerge; default 0.5
list of SNP groups