Construct a credible set for each trait and under each of single and multi-trait fine-mapping, and provide SNP PP details

Construct a credible set for each trait and under each of single and multi-trait fine-mapping, and provide SNP PP details

allcredsetsPP(mpp.pp, cred = 0.99)

Arguments

mpp.pp

object created in flashfm output, e.g. fm$mpp.pp if fm is output from FLASHFMwithJAM or FLASHFMwithFINEMAP

cred

probability for credible set; default is 0.99

Value

list with 3 components: list of single-trait fine-mapping credible sets for each trait with the SNP PP for each variant, list of multi-trait fine-mapping credible sets for each trait with the SNP PP for each variant, credible set probability

Author

Jenn Asimit