internal function for calcAdjPP for that gives list of covariance matrix of residuals for all trait pairs

internal function for calcAdjPP for that gives list of covariance matrix of residuals for all trait pairs

allC12(M, nummods, beta, SSy, Sxy, xcovo, Mx, Nqq)

Arguments

M

number of traits

nummods

list where component i is the number of models for trait i

beta

list of joint beta estimates for each trait

SSy

matrix of trait cross-products

Sxy

matrix with each column being the cross-product between SNPs and a trait

xcovo

covariance matrix of c("one"=1,X)

Mx

vector of SNP means

Nqq

has N[i,j] = no. with both trait i and trait j measured

Author

Jenn Asimit