AutocorrelationPlot.Rd
Generates an autocorrelation plot from a Java MCMC results class object
AutocorrelationPlot(
results,
plot.title = NULL,
file = NULL,
include.var.names.on.x.axis = TRUE,
covariates.to.include = NULL,
var.dictionary = NULL,
include.post.probs = TRUE,
cex.x.axis.ticks = 1,
cex.y.axis.ticks = 1,
cex.y.axis.labels = 1,
mar.for.varnames = 8
)
A R2BGLiMS R2BGLiMS_Results-class object frum running the R2BGLiMS R2BGLiMS command.
Optionally specify a title for the plot.
Path to a PDF to print plot to.
Include variable names perpendicularly below the x-axis. Turn off if it looks too crowded.
Character vector indicating a subset of covariates to include in the plot.
Character vector containing a mapping of covariate names to substitutions for the plot. The names of the elements are the variable names as in the original analysis (i.e. as named in the results object).
Include a barplot of posterior probabilities at the top.
Control the size of tick marks for the covariates along the X-axis. Decrease if there are many.
Control the size of tick marks for the Y-axis.
Control the size of the y-labels. Decrease if these are not fitting on.
Margin size for the bottom axis. Default is 8 so there is room for perpendicular variable names. Decrease if not using variable names.
NA